Organism | Data source | Version | Seq | Index | Annotation Format:Version | Location On BIG Cluster /leofs/database /public/Reference/ |
|
---|---|---|---|---|---|---|---|
Bwa | Bowtie /(2) | ||||||
Homo spaiens | Ensembl | GRCH38 | Chrom | ✓ | ✓ | GTF: GRCh38.77 | Human/ensembl |
NCBI | GRCH38 | Chrom | ✓ | ✓ | GFF3: GRCh38 | Human/ncbi | |
UCSC | hg18 | Chrom | ✓ | ✓ | SQL,TXT: 20141011 | Human/ucsc | |
hg19 | Chrom | ✓ | ✓ | SQL,TXT: 20141011 | Human/ucsc | ||
hg38 | Chrom | ✓ | ✓ | SQL,TXT: 20141011 | Human/ucsc | ||
Mus musculus | Ensembl | GRCm38 | Chrom | ✓ | ✓ | GTF: GRCm38.77 | Mouse/ensembl |
UCSC | mm10 | Chrom | ✓ | ✓ | SQL,TXT: 20141014 | Mouse/ucsc | |
Anolis carolinensis | Ensembl | AnoCar2.0 | Chrom | ✓ | ✓ | GTF: AnoCar2.0.77 | Lizerd/ensembl |
UCSC | anoCar2 | Chrom | ✓ | ✓ | SQL,TXT: 20141014,20141020 | Lizerd/ucsc | |
Arabidopsis thaliana | Ensembl | TAIR10.23 | Chrom | ✓ | ✓ | GTF: TAIR10.23 | ArabidopsisThaliana/ ensembl |
Bos taurus | Ensembl | UMD3.1 | Chrom | ✓ | ✓ | GTF: UMD3.1.77 | Cow/ensembl |
UCSC | bosTau7 | Chrom | ✓ | ✓ | SQL,TXT: 20141014,20141021 | Cow/ucsc | |
Branchiostoma lanceolatum | UCSC | braFlo1 | SQL,TXT: 20141011 | Amphioxus/ucsc | |||
Caenorhabditis elegans | Ensembl | WBcel235 | Chrom | ✓ | ✓ | GTF: WBcel235.77 | C.elegans/ensembl |
UCSC | ce10 | Chrom | ✓ | ✓ | SQL,TXT: 20141013 | C.elegans/ucsc | |
Canis lupus familiaris | Ensembl | CanFam3.1 | Chrom | ✓ | ✓ | GTF: CanFam3.1.77 | Dog/ensembl |
UCSC | canFam3 | Chrom | ✓ | ✓ | SQL,TXT: 20141014,20141021 | Dog/ucsc | |
Danio rerio | Ensembl | Zv9 | Chrom | ✓ | ✓ | GTF: Zv9.77 | Zebrafish/ensembl |
UCSC | danRer7 | Chrom | ✓ | ✓ | SQL,TXT: 20141013,20141020 | Zebrafish/ucsc | |
Drosophila melanogaster | Ensembl | BDGP5 | Chrom | ✓ | ✓ | GTF: BDGP5.77 | FruitFly/ensembl |
UCSC | dm3 | Chrom | ✓ | ✓ | SQL,TXT: 20141013,20141021 | FruitFly/ucsc | |
Gallus | Ensembl | Galgal4 | Chrom | ✓ | ✓ | GTF: Galgal4.77 | Chicken/ensembl |
UCSC | galGal4 | Chrom | ✓ | ✓ | SQL,TXT: 20141013,20141021 | Chicken/ucsc | |
Gasterosteus aculeatus | UCSC | gasAcu1 | Chrom | ✓ | ✓ | SQL,TXT: 20141014 | Stickleback/ucsc |
Gorilla | Ensembl | gorGor3.1 | Chrom | ✓ | ✓ | GTF: gorGor3.1.77 | Gorilla/ensembl |
UCSC | gorGor3 | Chrom | ✓ | ✓ | SQL,TXT: 20141014,20141021 | Gorilla/ucsc | |
Lepisosteus oculatus | Ensembl | LepOcu1 | Chrom | ✓ | ✓ | GTF: LepOcu1.77 | SpottedGar/ensembl |
Macaca mulatta | Ensembl | MMUL_1 | Chrom | ✓ | ✓ | GTF: MMUL_1.77 | RhesusMacaque/ ensembl |
Meleagris gallopavo | Ensembl | UMD2 | Chrom | ✓ | ✓ | GTF: UMD2.77 | Turkey/ensembl |
UCSC | melGal1 | Chrom | ✓ | ✓ | SQL,TXT: 20141013,20141020 | Turkey/ucsc | |
Monodelphis domestica | Ensembl | BROADO5 | Chrom | ✓ | ✓ | GTF:BROADO5.77 | Oppossum/ensembl |
UCSC | monDom5 | Chrom | ✓ | ✓ | SQL,TXT: 20141013,20141020 | Oppossum/ucsc | |
Oreochromis nilotica | UCSC | oreNil2 | Chrom | ✓ | ✓ | SQL,TXT: 20141024 | NileTilapia/ucsc |
Ornithorhynchus anatinus | Ensembl | OANA5 | Chrom | ✓ | ✓ | GTF: OANA5.77 | Platypus/ensembl |
UCSC | ornAna1 | Chrom | ✓ | ✓ | SQL,TXT: 20141013,20141020 | Platypus/ucsc | |
Oryza sativa L. | Ensembl | IRGSP-1.0.23 | Chrom | ✓ | ✓ | GTF: IRGSP-1.0.23 | Japonica/ensembl |
Oryzias latipes | Ensembl | MEDAKA1 | Chrom | ✓ | ✓ | GTF: MEDAKA1.77 | Medaka/ensembl |
UCSC | oryLat2 | Chrom | ✓ | ✓ | SQL,TXT: 20141013 | Medaka/ucsc | |
Ovis aries | Ensembl | Oar_v3.1 | Chrom | ✓ | ✓ | GTF: Oar_v3.1.77 | Sheep/ensembl |
UCSC | oviAri3 | Chrom | ✓ | ✓ | SQL,TXT: 20141014 | Sheep/ucsc | |
Pan troglodytes | Ensembl | CHIMP2.1.4 | Chrom | ✓ | ✓ | GTF: CHIMP2.1.4.77 | Chimp/ensembl |
UCSC | panTro4 | Chrom | ✓ | ✓ | SQL,TXT: 20141014,20141021 | Chimp/ucsc | |
Petromyzon marinus | Ensembl | Pmarinus_7.0 | GTF: Pmarinus_7.0.77 | Lamprey/ensembl | |||
UCSC | petMar2 | SQL,TXT: 20141013,20141020 | Lamprey/ucsc | ||||
Pongo abelii | Ensembl | PPYG2 | Chrom | ✓ | ✓ | GTF: PPYG2.77 | Orangutan/ensembl |
UCSC | ponAbe2 | Chrom | ✓ | ✓ | SQL,TXT: 20141014,20141020 | Orangutan/ucsc | |
Rattus norvegicus | Ensembl | Rnor_5.0 | Chrom | ✓ | ✓ | GTF: Rnor_5.0.77 | Rat/ensembl |
UCSC | rn6 | Chrom | ✓ | ✓ | SQL,TXT: 20141014,20141020 | Rat/ucsc | |
Sus scrofa | Ensembl | Sscrofa10.2 | Chrom | ✓ | ✓ | GTF: Sscrofa10.2.77 | Pig/ensembl |
UCSC | susScr3 | Chrom | ✓ | ✓ | SQL,TXT: 20141014,20141020 | Pig/ucsc | |
Taeniopygia guttata | Ensembl | taeGut3.2.4 | Chrom | ✓ | ✓ | GTF: taeGut3.2.4.77 | Zebrafinch/ensembl |
UCSC | taeGut2 | Chrom | ✓ | ✓ | SQL,TXT: 20141013,20141020 | Zebrafinch/ucsc | |
Takifugu | UCSC | fr3 | Chrom | ✓ | ✓ | SQL,TXT: 20141024 | Fugu/ucsc |
Xenopus tropicalis | Ensembl | JGI_4.2 | GTF: JGI_4.2.77 | Xenopus/ensembl | |||
UCSC | xenTro3 | SQL,TXT: 20141014,20141020 | Xenopus/ucsc |