数据展示

数据展示-公共数据

OrganismData
source
VersionSeqIndexAnnotation
Format:Version
Location
On BIG Cluster
/leofs/database
/public/Reference/
BwaBowtie
/(2)
Homo
spaiens
EnsemblGRCH38ChromGTF: GRCh38.77Human/ensembl
NCBIGRCH38ChromGFF3: GRCh38Human/ncbi
UCSChg18ChromSQL,TXT: 20141011Human/ucsc
hg19ChromSQL,TXT: 20141011Human/ucsc
hg38ChromSQL,TXT: 20141011Human/ucsc
Mus
musculus
EnsemblGRCm38ChromGTF: GRCm38.77Mouse/ensembl
UCSCmm10ChromSQL,TXT: 20141014Mouse/ucsc
Anolis
carolinensis
EnsemblAnoCar2.0ChromGTF: AnoCar2.0.77Lizerd/ensembl
UCSCanoCar2ChromSQL,TXT: 20141014,20141020Lizerd/ucsc
Arabidopsis
thaliana
EnsemblTAIR10.23ChromGTF: TAIR10.23ArabidopsisThaliana/
ensembl
Bos taurusEnsemblUMD3.1ChromGTF: UMD3.1.77Cow/ensembl
UCSCbosTau7ChromSQL,TXT: 20141014,20141021Cow/ucsc
Branchiostoma
lanceolatum
UCSCbraFlo1SQL,TXT: 20141011Amphioxus/ucsc
Caenorhabditis
elegans
EnsemblWBcel235ChromGTF: WBcel235.77C.elegans/ensembl
UCSCce10ChromSQL,TXT: 20141013C.elegans/ucsc
Canis lupus
familiaris
EnsemblCanFam3.1ChromGTF: CanFam3.1.77Dog/ensembl
UCSCcanFam3ChromSQL,TXT: 20141014,20141021Dog/ucsc
Danio
rerio
EnsemblZv9ChromGTF: Zv9.77Zebrafish/ensembl
UCSCdanRer7ChromSQL,TXT: 20141013,20141020Zebrafish/ucsc
Drosophila
melanogaster
EnsemblBDGP5ChromGTF: BDGP5.77FruitFly/ensembl
UCSCdm3ChromSQL,TXT: 20141013,20141021FruitFly/ucsc
GallusEnsemblGalgal4ChromGTF: Galgal4.77Chicken/ensembl
UCSCgalGal4ChromSQL,TXT: 20141013,20141021Chicken/ucsc
Gasterosteus
aculeatus
UCSCgasAcu1ChromSQL,TXT: 20141014Stickleback/ucsc
GorillaEnsemblgorGor3.1ChromGTF: gorGor3.1.77Gorilla/ensembl
UCSCgorGor3ChromSQL,TXT: 20141014,20141021Gorilla/ucsc
Lepisosteus
oculatus
EnsemblLepOcu1ChromGTF: LepOcu1.77 SpottedGar/ensembl
Macaca
mulatta
EnsemblMMUL_1ChromGTF: MMUL_1.77RhesusMacaque/
ensembl
Meleagris
gallopavo
Ensembl UMD2ChromGTF: UMD2.77 Turkey/ensembl
UCSCmelGal1ChromSQL,TXT: 20141013,20141020Turkey/ucsc
Monodelphis domestica Ensembl BROADO5ChromGTF:BROADO5.77 Oppossum/ensembl
UCSCmonDom5ChromSQL,TXT: 20141013,20141020Oppossum/ucsc
Oreochromis niloticaUCSCoreNil2ChromSQL,TXT: 20141024 NileTilapia/ucsc
Ornithorhynchus
anatinus
EnsemblOANA5ChromGTF: OANA5.77 Platypus/ensembl
UCSCornAna1ChromSQL,TXT: 20141013,20141020Platypus/ucsc
Oryza
sativa L.
EnsemblIRGSP-1.0.23 ChromGTF: IRGSP-1.0.23 Japonica/ensembl
Oryzias
latipes
EnsemblMEDAKA1ChromGTF: MEDAKA1.77 Medaka/ensembl
UCSCoryLat2ChromSQL,TXT: 20141013Medaka/ucsc
Ovis
aries
Ensembl Oar_v3.1ChromGTF: Oar_v3.1.77 Sheep/ensembl
UCSCoviAri3ChromSQL,TXT: 20141014Sheep/ucsc
Pan
troglodytes
EnsemblCHIMP2.1.4ChromGTF: CHIMP2.1.4.77 Chimp/ensembl
UCSCpanTro4ChromSQL,TXT: 20141014,20141021Chimp/ucsc
Petromyzon
marinus
EnsemblPmarinus_7.0GTF: Pmarinus_7.0.77Lamprey/ensembl
UCSCpetMar2SQL,TXT: 20141013,20141020Lamprey/ucsc
Pongo
abelii
EnsemblPPYG2ChromGTF: PPYG2.77 Orangutan/ensembl
UCSCponAbe2ChromSQL,TXT: 20141014,20141020Orangutan/ucsc
Rattus
norvegicus
EnsemblRnor_5.0ChromGTF: Rnor_5.0.77 Rat/ensembl
UCSCrn6ChromSQL,TXT: 20141014,20141020Rat/ucsc
Sus
scrofa
EnsemblSscrofa10.2ChromGTF: Sscrofa10.2.77 Pig/ensembl
UCSCsusScr3ChromSQL,TXT: 20141014,20141020Pig/ucsc
Taeniopygia
guttata
Ensembl taeGut3.2.4ChromGTF: taeGut3.2.4.77Zebrafinch/ensembl
UCSCtaeGut2ChromSQL,TXT: 20141013,20141020Zebrafinch/ucsc
TakifuguUCSCfr3ChromSQL,TXT: 20141024Fugu/ucsc
Xenopus
tropicalis
EnsemblJGI_4.2GTF: JGI_4.2.77Xenopus/ensembl
UCSCxenTro3SQL,TXT: 20141014,20141020Xenopus/ucsc
注:Annotation栏目中表示文件格式及版本(或发布日期)
    Index栏中标识出是否有该比对软件所需的索引文件
    Location中注明在服务器上的绝对路径,公共路径为:/leofs/database/public/Reference/
    Seq(Sequence)中表明是Chrom(Chromosome)、Scaffold、Contig中的哪一种